miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|200969003|gb|FD054368.1|FD054368 GAGAGAATCAGAGAGGAACTGACACATGACCACAAAGTGGATGAAGGTGAGAAGCTTCCTGCTTATCAGCGCTACCACAC
ACTAGCTCAGGACGTTCCCCCTGGCCTCACCCTGCCCTTCAAATACAAGGTTTTAGCAGAAATGTTCCGCAGTATGGACA
CCATCGTCGGCATGCTCTTCAACCGCTTGGAAACCGTCACCTTCGCCAAAGTCAAACAAGGAGTCCAGGACATGATGCAC
AAGCGTTTTGAAGAGTCTCACATAGGACAGATTAAGACGGTGTACCCATCCGCCTACACCTTAAGGCAGGAGAAAAACAT
CCCGACCTTCAGCGCTACAGTGAAAAAATCCACCTACCAACTCACTGTGGAGCCGCTCATCGAAGAAGAAACAAACGGCG
CCCGCCCCGTCCTGTCTGCTACTCGTCTGCTGGAGAGAAGACGCGCGTTTCATCAGAACCTGCTGGAAATCGTGAAGGGA
CACCATAAGGTGTTCCTAGCTTCGTTGAGCCCTCCTTTAGTGGTCCCTGATGATAAACTAACTCGCTGGCATCCCAAATT
CAATGTGGACGAGGTGCCCAACATCCTGCCCAGCGACTTGCCTCAGCCTCCACAGACGGAGAAACTCACCACTGCTCAGG
AAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAGAG
GCAGCTTGT




Most similar to sp|Q9I9A7|CDT1_XENLA

>>sp|Q58FG1|HS904_HUMAN Putative heat shock protein HSP 90-alpha A4
           OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1
          Length = 418

 Score =  101 bits (252), Expect(2) = 1e-21
 Identities = 48/68 (70%), Positives = 55/68 (80%)
 Frame = +1

Query: 547 EYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDNRKKLNNIKLYVRR 726
           EY  FYKSLT +WE++LAVKHFSVEGQLEF+A LFVP+ APF+L + RKK N IKL  RR
Sbjct: 112 EYREFYKSLTINWEDYLAVKHFSVEGQLEFRAFLFVPRLAPFELLETRKKKNKIKLSARR 171

Query: 727 VFIMDNCE 750
             IMDNCE
Sbjct: 172 DLIMDNCE 179



 Score = 23.1 bits (48), Expect(2) = 1e-21
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 750 ELIPEWLSFVRALL 791
           ELIPE+L+F+R ++
Sbjct: 180 ELIPEYLNFIRGVV 193


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis
           GN=cdt1 PE=1 SV=2
          Length = 617

 Score =  340 bits (872), Expect = 6e-93
 Identities = 169/249 (67%), Positives = 202/249 (81%), Gaps = 8/249 (3%)
 Frame = +1

Query: 4   RIREELTHDHKVD-------EGEKLPAYQRYHTLAQDVPPGLTLPFKYKVLAEMFRSMDT 162
           R + E T    +D       E EK PAYQR+H LAQD  PGLTLP+KYKVLAEMFRSMDT
Sbjct: 215 RAKAEKTETQAIDLTEQPAQESEKAPAYQRFHNLAQDAAPGLTLPYKYKVLAEMFRSMDT 274

Query: 163 IVGMLFNRLETVTFAKVKQGVQDMMHKRFEESHIGQIKTVYPSAYTLRQEKNIPTFSATV 342
           IVGMLFNR ET+TF+KVKQGVQDMM K+FE+ ++GQIKTVYP+AY  RQEKNIPTF   V
Sbjct: 275 IVGMLFNRSETITFSKVKQGVQDMMRKQFEQRNVGQIKTVYPNAYKYRQEKNIPTFKDGV 334

Query: 343 KKSTYQLTVEPLIEE-ETNGARPVLSATRLLERRRAFHQNLLEIVKGHHKVFLASLSPPL 519
           KK+ YQLT+EPL+ E +    RP LSA+RLLER++ FH++L  IVK HH+VFL SL+PP+
Sbjct: 335 KKTDYQLTIEPLVAEGDMLSGRPHLSASRLLERKQLFHRSLTSIVKQHHRVFLTSLNPPM 394

Query: 520 VVPDDKLTRWHPKFNVDEVPNILPSDLPQPPQTEKLTTAQEVLDRARSLMTPKMEKALAN 699
           +VPDDKLTRWHP+FNVDEV ++ P++LP PPQ E+LTTAQEVL +AR L+TPKMEKALAN
Sbjct: 395 LVPDDKLTRWHPRFNVDEVLDVTPAELPLPPQVERLTTAQEVLSKARGLITPKMEKALAN 454

Query: 700 MALKTAEAA 726
           +ALKTAE A
Sbjct: 455 LALKTAENA 463